Scaffold Ga0066383_10029333

Overview

Basic Information

• Taxon OID: 3300005953
• Scaffold ID: Ga0066383_10029333
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1798
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020257	Metagenome	225	Y
F099863	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066383_100293333	F099863	GAG	MDEKEMSEEELKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV*
Ga0066383_100293334	F020257	N/A	WYQFQVIASGYPAEHECLFGGYNPMPIGVPPESLNPPHYGIHYYNPEDRKRADSWYYYATSAEDYERAKKENYAMPYWKPDCGYVCFVGENYKIKEIDYGVIPIGDLRPPSGAYALQEALKGGHDRIEVFGFDSIAGVFSTSSQIAYKEHDSDDDKIIQDRLDKWMTFYKTVTEHYNEIEIIWHKQQQEKI*