NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066787_10007129

Scaffold Ga0066787_10007129


Overview

Basic Information
Taxon OID3300005950 Open in IMG/M
Scaffold IDGa0066787_10007129 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1719
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004702Metagenome / Metatranscriptome427Y
F019512Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0066787_100071291F004702AGGAGMKGSAMRKSFLVFILAGAALAVACGGGAEGKYRDPSGTINAEFKDGKAYVALGGYAVDGTYKIEGDKIIARGDFGMMLPSPLVFTINKDGSIDGPRSTMIPRLEKVK*
Ga0066787_100071292F019512GAGGMRTRLGAVVIAALALAGALGAIGCGHSGSADAETPGLSGADQQAEHAAMAELQKHWLKGADGWTTSVLSGSAYAPDRFLRQCRTLAIQELQPQDLTESDKLNGFEWVGRATLKPTSCREGGGQPGMVLDGMSQVVVSKQHGHWSQWVDFTPGPMRFQKQKGAWQFEWDGSYLRGTLPGPQDFASAGVQQGN*

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