Scaffold Ga0066787_10000445

Overview

Basic Information

• Taxon OID: 3300005950
• Scaffold ID: Ga0066787_10000445
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5389
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F004287	Metagenome / Metatranscriptome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066787_100004453	F001450	AGGTGG	VNDSAQIRVTRETYETPRGICERVMAAGGANRYGEANFRVMWGGSRLTWIGGRWTDRDASGNVIREAIETRQVPKYLPVERWHIERWMPPESYGSPEEWCAQTTEVEDGVRIAALGPYPARGEYEHCFTLAGADGGYMALSPAACDWIVRAVEWAKRQPRREQGGAIAAREARRARDWDREADDLLDDAVPAFHGAPFVGCAG*
Ga0066787_100004454	F004287	AGGA	LETTATVSSGLRRDILIDTGEKGDRAATVSIGSISDQDWYISRTHGVYHIPACVKGQPFALLMITARGDALDLGDNRRFPFTITARQIAEDLLQDLHDHGIFICAGARPSSEELATSTLRRDAYYQRLITEGDTMWARGHSFREISDLHRRAAIGLGVEREWAYVPMRMGDCPACGEKVKIGVAVCKHCSAILDEEKAAKHGLGAGAAAARVKRLGGEGTENFERKNRA*