NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066791_10034174

Scaffold Ga0066791_10034174


Overview

Basic Information
Taxon OID3300005949 Open in IMG/M
Scaffold IDGa0066791_10034174 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil leachate replicate DNA2013-051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1004
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092587Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066791_100341741F092587N/AQTLFSFNNPQEHERYEVQIESEDPRGDEDIMALSLHLVRNGVEQEIPVGMRFVLNLKRQEGTWRLKAVTLSATLLVGDPRIMDKSWWSAVLVAATGGNNDSASTEVIVVDERPKMTPLRAVRMIGMAEDIYVQKHPGLGYTCTLADLVNVGRGMDEDGMYKFMDAEFAGGFYNGYRFTLSGCERKPARMFRVTAEPLAGRGKAYCSDNTNNLRASDDGRGASCLISGKIAHK*

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