Scaffold Ga0066380_10175000

Overview

Basic Information

• Taxon OID: 3300005948
• Scaffold ID: Ga0066380_10175000
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 649
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F010479	Metagenome / Metatranscriptome	303	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066380_101750001	F000245	N/A	MINFKEYLKETRLDRKLDKYVSDEIKKRKLARHPVNATDDIKMRMKPNKPVFKFPSPSGDMMIHVFLRKMAPPAKKHTMAFNYQLEDK*
Ga0066380_101750002	F010479	GAG	MKSFKQHLKEFVSYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHTTDLRGLESLKRLEGGKKTISAFFSMMARYMEGGIATGGGIVVEMEADILVSAKDDIMSKVDKKGRRWVA