NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066794_10044558

Scaffold Ga0066794_10044558


Overview

Basic Information
Taxon OID3300005947 Open in IMG/M
Scaffold IDGa0066794_10044558 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1310
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019749Metagenome228Y
F090751Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066794_100445581F019749N/ADPVLEPRLSAGRPGRPKGSGNYEWTPEADGLLMELCAKWGTAKAKRIMGRKIQECRPAPAAPRPDSVRKAVEHRMAKLGISTGQKRTKPHMREAKRWTESQTTALLGALGADATIESIAARTGHSVKSVRAKIARLDYGIHEIHGFTVFTVNSLAGVLRVTSRQIRRWKERGWLETKDRRIAEECLGQFLRAHPDRIPFDSLRREDQVFLVDLGFPCREAATFKKNVREILESIGRQRKPRRPVRRSDATAMDVCSGDDDTDGDDASTLTMETSA*
Ga0066794_100445582F090751N/AVRGVSEPEWSNLLNRFSDLITFSLWMELVLDIEGPTSGLVSKELAETYGGFSVSPSTMGSKEVVRALNAWVLDHALAIADEKPLLAALSFHVSHHPAYPAMRSYALHCHDVWPDEYPDHLPSFEQWREAADEYFEE*

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