Scaffold Ga0066378_10023679

Overview

Basic Information

• Taxon OID: 3300005946
• Scaffold ID: Ga0066378_10023679
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1935
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F006348	Metagenome / Metatranscriptome	375	Y
F008624	Metagenome / Metatranscriptome	330	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066378_100236791	F006348	N/A	MEESKMHKFYIVEDIRFDTKFKTEEEIKELEWKQDQAIGVWGAVGRTEDERINDLWEKVQDYMGVYLTMLEYCNNRPH
Ga0066378_100236795	F001419	AGGA	MPVMYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFYNYDRD*
Ga0066378_100236797	F008624	N/A	MNNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITYS*