Scaffold Ga0066381_10036394

Overview

Basic Information

• Taxon OID: 3300005945
• Scaffold ID: Ga0066381_10036394
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_AAIW_ad_876m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1354
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023247	Metagenome	211	Y
F096262	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066381_100363942	F023247	GGA	MTLSTGPTLNFFGDHVFAWSGQEDLTAGVTTLLDFISPNRFYSVVTNVSFDYSGCSAGDALSWTVQGNGEALHVSKFLIIDAGVGPQFPNLYYTIPPNTGMKILAQGPTGKITVVVEGKEVQ*
Ga0066381_100363944	F096262	N/A	MGVSSVGTGADFCSGFKLTGTALQEGDATFMGPAIAQAASGGTGVANCVVQEKTALGVTSGNTLDIQMAVTTAATIDASCTITFE*