Scaffold Ga0073926_10003318

Overview

Basic Information

• Taxon OID: 3300005943
• Scaffold ID: Ga0073926_10003318
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2900
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F033349	Metagenome / Metatranscriptome	177	N
F075873	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073926_100033181	F033349	AGGAGG	MLEATINGWILTMGGDRYVYTDKQVDDYLLNHHFDELEPYMLKRDVYFGGCVETNLVGIESERFFYLEPDKFTVLFMLGQKTNFL*
Ga0073926_100033183	F002909	N/A	VAEIDLSKLGDVLDSFLGDENVGNPFNILLEQIIRDWWNNKVNPQIARTMDERKINASGGLKASFKPGEIIKTPTSINTILVADDYWEFVEFGRKPTRNGHIEGTPYLWQSIKEWIRAKPIAIPQNMTHDSLAKAIAKKIHRRGTKANPFLEDAFTESLQMELVNELNARLGDLIFAVEVKS*
Ga0073926_100033184	F075873	GAGG	MDLRIYTKQSGILTSSSQRRKNKRRKTLLCKMRFLLILLLPLTSYGQVLVDTNTIKQANHYLVKGAIAREQVTVLRKIVTSDSIIIAEQDSIIVKVRINNAYLREKNNALVSENKAISRKIILWQGVSITLTFLTLLSWLK*