Scaffold Ga0073926_10002229

Overview

Basic Information

• Taxon OID: 3300005943
• Scaffold ID: Ga0073926_10002229
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3591
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F021772	Metagenome	217	Y
F024977	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073926_1000222910	F024977	AGGA	MTEFMQPINPMRITTGSDEWSFKTPVFAIAVQDDKVTYLTINGNFYTPEKIKFAEMNINGQWVVLESHKHPTVNPA*
Ga0073926_100022296	F001332	AGGAG	MNQQLSDMTAAIAKAEIAMKAAAWQLEAQKSDIEMLRKALFELAYVAEENGIYLSNLTRSTQDAIVAMRLGGFK*
Ga0073926_100022297	F021772	GGCGG	VNCNICACGFNSADMRMRTELRGICLKCAEEFGFQGMTIEETARCVSMIRVVNNLKNQTPAQARHLKDMES*