Scaffold Ga0073926_10000402

Overview

Basic Information

• Taxon OID: 3300005943
• Scaffold ID: Ga0073926_10000402
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9241
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F048984	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073926_1000040217	F013413	GAG	MTENEYNETFDMQMEKEHQETMRRMQEFRLIGEQISKMPDMSPKVLEIEVRYLMGIISELETRVKDLESEARRLEMLLTRAN*
Ga0073926_1000040218	F014620	N/A	MFAPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAVKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGVRRLTRAGNQAIVWRCV*
Ga0073926_100004023	F048984	AGG	MAAQTYSDLFNTAINTLASTLNAVTGLVCITDPRNVQPPCILLDAMSFTAFNSNIVDMSIPVTVISLGPSNADAYRNCLNIAAKVLAAKVAVTDGRPSTLSIGGVDYPALSLNIQMKASTT*