NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070742_10192381

Scaffold Ga0070742_10192381


Overview

Basic Information
Taxon OID3300005942 Open in IMG/M
Scaffold IDGa0070742_10192381 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.757
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Idiomarinaceae → Idiomarina → unclassified Idiomarina → Idiomarina sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053264Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0070742_101923811F053264N/AMSISHRSNRLKLVGSPSVEKLQNGRYKLVVTCSTMNSREDWYSANKDRIFPDFGSLQSAEMSIDGLAPRTGEAYADMRLTQVESGNRSTRDGGDYIVVLTYETLGSAFVQVKDDDTDYELNGLRRVRRTSIAEAGTDYAKTVGTSYIDHQIDAEAAVRCFLASYAIDDTDSFRQVQEVYI

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