Scaffold Ga0070742_10006041

Overview

Basic Information

• Taxon OID: 3300005942
• Scaffold ID: Ga0070742_10006041
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3155
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025614	Metagenome / Metatranscriptome	201	Y
F038249	Metagenome / Metatranscriptome	166	N
F039873	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070742_1000604110	F038249	GGAG	MIPSAFRGVNVPVYVKSKTQLIAWALEEFMDSDPITNWEFVRELYCHRFGGILFNLRAEGYEITTLPTKTRGLVSYYCTKVPARAAIS*
Ga0070742_100060414	F039873	N/A	MSDIAPIREEAFRRAGNVCEWANCDSNKWLELAHLKDIGMGGNKARKYNVDNTAVLCKWHHDIYDGRQSMGTKVAYRELLEGYLDRHSGVT*
Ga0070742_100060417	F025614	GAGG	MSDKKKQSVDINKINIFMHPRYMKVWAQQFSKACGSDTFNVPADTITLRMLMDKFVTDYNWHLSQLGEEE*