Scaffold Ga0070743_10194552

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10194552
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 667
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N
F039047	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_101945521	F039047	N/A	MKMKIEVDINDLVALKVALGNSARRIDELMNDKPDWRNLYEFDKNSVEKAQKVLAKMIANS*
Ga0070743_101945522	F029747	AGG	MKYKLMIDTDTCTSFSTYPHTREGLNKALDRVDSERSRDGFKSANIVSDRDGEVFAIDMSLAIN*
Ga0070743_101945523	F038235	N/A	MIREILAPFERVTYVREDGNQAVYKVFRPTKHLFINKKKDNGAVVGFRAWKMPDTGADERMGWRSFRFDRIASRK