Scaffold Ga0070743_10041234

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10041234
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1581
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010321	Metagenome / Metatranscriptome	305	Y
F020497	Metagenome	223	Y
F054035	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100412341	F054035	N/A	GKLQAAGHMKVNGFRSMGVEQEVVKDTFTDELGGVKKTIKLEYQMYNLNGMDDKPHFDGYLRSASEVDKRYKLKGWFNEDGTIRIELVN*
Ga0070743_100412343	F020497	N/A	MENLIKLESINVWAGTLGIMPSDENNLPIMEESRSWTSLENEWFANLSAEDKELVNEIINKNK*
Ga0070743_100412345	F010321	GGAG	MTFEELQRQEVERLNNALVSQSLQPEDKKLLNQKMFNPKTGELQLFVDNGKGGVKMAAVNIFE*