Scaffold Ga0070743_10040142

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10040142
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1604
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003690	Metagenome / Metatranscriptome	473	Y
F008132	Metagenome / Metatranscriptome	338	Y
F014142	Metagenome / Metatranscriptome	265	Y
F066779	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100401421	F066779	AGGA	MFSLSYKVQYSDTEFSTCLGVLMNTEQDANKYLDLLSERGTILECSLRELENYTPSKRVVIATTRSWE*
Ga0070743_100401422	F014142	GGAG	MTNTLSVVVEPSHPMASSNTKSNEVFRLSNGNYISRMAYVYMVMSENLISHRYLTPNESKWVFANRVG*
Ga0070743_100401424	F008132	AGG	MTKWDTIQADVADAYTYLDEEEAYNNMLDDEEDIFGFVKAIEIDHLTDEQLDEVFDMFGDK*
Ga0070743_100401425	F003690	GGAG	MTINGFELIISNDYGLEFDSFLGSIYLPWHTIAITTALLIAYKIYKRKKNI*