Scaffold Ga0070743_10025683

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10025683
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2041
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001460	Metagenome / Metatranscriptome	690	Y
F009685	Metagenome / Metatranscriptome	314	Y
F025671	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100256832	F000852	AGGA	MTTKREYLKQQGIAVGVRGRFSGAAKVALAEATAKGITFTAEAPVKKAK*
Ga0070743_100256833	F009685	AGGA	MKMSDQYVDSVLAEAQKLLWGGSETENIAAHNLISKLIKDRLEVISN*
Ga0070743_100256835	F000263	AGG	MEFTPDYNVPAHLQRMIDAGVNGLDIMHGELKNLMLIAEQQLAEAQEVEDLSEEAMDSMERTRCEGALDTLVELYKLTYQLSFAIGARNEA*
Ga0070743_100256837	F001460	GGA	MLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHA*
Ga0070743_100256839	F025671	N/A	YCENDCGEFCSECNQGSWQDEVAMKECQTHMVLLETTEKVDA*