Scaffold Ga0070743_10025419

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10025419
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2054
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F061860	Metagenome / Metatranscriptome	131	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100254193	F061860	AGGA	MNTTQLEARLQKLVDLGESGTDILHGELKNMMYECEKELVPLLENSNEVGSDEDYEDTVQRLYNEGYMDALTAVYELTYQLAFAISDRRAKND*
Ga0070743_100254194	F090399	GAGG	MSEFIEYIKIHIISLEQDLEKIDYVNAHHFYRVKQAEIETAQHLLSVAEDILDK*
Ga0070743_100254198	F001507	N/A	MTQTKYKPYTIDELVTSIYEDNYSHFDFMENMNGGECDCTLHQAMWLIMLHWEGDND*