Basic Information | |
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Taxon OID | 3300005941 Open in IMG/M |
Scaffold ID | Ga0070743_10001358 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9392 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002260 | Metagenome / Metatranscriptome | 577 | Y |
F003807 | Metagenome | 467 | Y |
F023848 | Metagenome | 208 | Y |
F051963 | Metagenome / Metatranscriptome | 143 | N |
F078735 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0070743_100013581 | F023848 | N/A | PDRYVVRHMNYLQMRSGNLEFIEEQKKMISPLKFEQDYMCSWESVQDQFFYTFNRAKHCRDIFDNLGDIYTFHDFNKRVMCATVAQVTNPGDMKGTIEILKSYAIKNCSTEDLAKQIREDYPRRRIFSIIDMSGAQTNRDTTSTFGVTDRTILEKYGFTIINSKRSNPLISDTDNSSNAFINRGGLVISPYDVQSIEALQSYHFEDGTRKKLVKYTDAKYSHIDGLGDSIRYGIHHLFPVQHDSWGGADYVGNDQRISRAMQPGLEHEPYSPLYEGGPTWEEIMGQRDEDIDHVIW* |
Ga0070743_1000135810 | F003807 | AGGA | MTQTNDVWLKSDEDKLQSLIADEAKMIPMLDNMGATIRQLKAKQQFRLALLNQVLESLTGDTKYNSKNNS* |
Ga0070743_1000135812 | F078735 | N/A | MTSIMQIDSLGKRYALLPSEVLKRADSFDLFIMDAAMSFEHYHNKKSSTGKAPIPDYTVDELKAMKGK* |
Ga0070743_100013587 | F002260 | AGGA | MSVPFQRISNATVADIIFYDPAAERRAAQMQIDWDTYFNVGSQEILYTLEFGWWPAYVDATTGSTLYANLPNGQLISSFNPNLLIKSDQTLIRLDTFKAVETFYSSLVSDTSNVNSVDTANYNHALERYEKEYEKALQLMNFYDLYQDAPEGPTTKLEENWTADADFFNNNRRWF* |
Ga0070743_100013588 | F051963 | AGGAG | MALSNLPLVDKAKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGLYVDDVTENSRTVNQLAVQKCGSMYDAVDEFNILYISFQNDPQAPVILNAINNLAGNVNFFDGYTSVEYSRDVTIGNKSEIHTYTFNLTRLEFNNAIIS* |
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