Scaffold Ga0070743_10001177

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10001177
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10029
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015852	Metagenome / Metatranscriptome	251	Y
F053137	Metagenome	141	N
F060835	Metagenome	132	N
F071094	Metagenome / Metatranscriptome	122	Y
F082556	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000117711	F082556	N/A	MIVKLTTEQSVYIEIDGYTYYIDHSLDEPIVERWTEETEPITLLPEDND*
Ga0070743_1000117724	F071094	GGA	MIIFLLTVSVCLLLLVVGMLLYIGYKVRQFEDTQDVIFDAAVSAEERNREIELNQEAILNAYSRQN*
Ga0070743_1000117726	F060835	N/A	MTYHTNPITREAIDKLLQKNASNQANLGTESTDLERFETKIKWAELLREIRSLDAEFADIVQAQ*
Ga0070743_1000117727	F015852	N/A	VAWQGCNSEAKTITKVIERPVPTIKYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTVNDIRLTWSNYQNRTENLKVQLRKKPLGWALGVHGLVGLQSDFVESYTPLFGVGLQATIKRTYISANYGFNGQHFVGVGIGRNIISR*
Ga0070743_100011777	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGSSAFKHQLKNKGNSFAKEVDKFLNSTYSKGSTDTSIVNLIEGCQDAIDKLVEQSVTVTE*