Scaffold Ga0070743_10001151

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10001151
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10113
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (96.55%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001125	Metagenome / Metatranscriptome	769	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017134	Metagenome / Metatranscriptome	242	Y
F023344	Metagenome / Metatranscriptome	210	Y
F053291	Metagenome / Metatranscriptome	141	N
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000115112	F005741	AGG	MKNRFRVEIYDANKLNDLTIYSDSGVDKEYLTELVISNIKQFSGRVNAYAYDAQKKKKITAMFFDEDTVHKLKSKIQSAARISFKLE*
Ga0070743_1000115116	F000311	GAG	MYFELTAPTQVAFARATWEAELLGLDPEQCGPLTFNIGTGSIEKVSRIRDKYNLTESYWSDREATGYKEK*
Ga0070743_1000115119	F001125	GGCGG	MGNRANFGFRDSKGETLYLYGHWAGSEMLHHLATAVAKAEPRWTDEAYATRICISQLVAQEWESETGWGLYINHIGDNEHKVPVIDWSKKTFTLYEEDLSQVVFSLPIDKFVDKYSRLVMV*
Ga0070743_100011512	F007263	AGG	MIKNYLDENEFYFIKDEMKFHCDESQFIYVCKAHGEQMGCYFCEFDYSKECECEA*
Ga0070743_1000115121	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQHLFEQWNSKNLDEGSDYAEWQFMSFAPDNLKQSYNEYYGYIEGDEYCL*
Ga0070743_1000115122	F053291	GGAG	MITTQELINYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC*
Ga0070743_1000115124	F063705	GGAGG	LTKSSQFLEYMKIHLISLNQDLEDARNNEPLNEDEYWESDSFYMGAIDATEHLLSVATDIMNSTSERYE*
Ga0070743_1000115125	F000263	AGG	MNAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMFIAEQELSDAQAIEDESEEAMDSMARTEATGRLDALVELYQLTYQLSFAIGEAYDRELKAGMK*
Ga0070743_1000115127	F000441	GAGG	MKMSDRYVNDQLDKAQKLLWGGSETENIEAHNIIAKLIKDRIEQTNLT*
Ga0070743_1000115128	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALQEAATKGIVFTAEPVNKAK*
Ga0070743_100011516	F017134	GGAG	MEQFTVACLNYEICGAQEIFYSDEDYEVYGDDYTCAECYASEEMEFYELTGWADSDALASAGHGMDEDY*