Scaffold Ga0070743_10000706

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000706
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12919
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (60.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000919	Metagenome / Metatranscriptome	834	Y
F014121	Metagenome / Metatranscriptome	265	Y
F020907	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100007062	F000345	GGAG	LVTPDSLELYLEKMTEPNEFGKMLKEWWASDACKELQKSNEEAKQRAIGKYFMLSESDKLDMVQAICYIMCKAEKEGTSHRGLQDALGIYPGGFWVSELMTVHNSLWSYYHDQKAEKELKDDLDALEEFVENKREC*
Ga0070743_1000070627	F000919	GGAG	MRFRNIEFRWSTYNKKHELVKWYKLEERNYSYVIALFDKTNEGYNMRTIGDRFFEDKDAWVVGKHAIEFLNAIFEIERIEEELK*
Ga0070743_1000070628	F014121	GAGG	MTNTAYQIWETFKAELTQPATDDMKEALASSIRVISSIIHRDGVLENEPWHLHIADELNEYADNVEAL*
Ga0070743_1000070634	F020907	N/A	MSKSYISCYNNETKELEHDEQLLNSLQGTMATIDPYSVKKEALDEYRIDTIEERLTRIEDKVDLLISQLKIEFYKKNDGTSR*