Scaffold Ga0070743_10000437

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000437
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16553
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028498	Metagenome / Metatranscriptome	191	N
F103078	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100004373	F028498	N/A	MADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKENLQQDDCYTLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKVRTRMQLSSRRNHRIHKLAQKKHIHFLYDTTRGYLEIYDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRMPINKISNSQEDSNIQRDVQTK*
Ga0070743_100004376	F103078	N/A	MEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTNRGDIRFAGELATESKIFGDSVEEVEDQIDFWMNHPMVEDINGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMNDDDITLELVDIEGGLLLREPNTSRFIETFGSLNKSLVAKKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEYEDDDITPAEKRAHFTKLYKKYKFKGKFPADLDKAIERIHAYEEENGIELSE*