Scaffold Ga0070743_10000407

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000407
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17124
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (70.97%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F013753	Metagenome / Metatranscriptome	268	Y
F026484	Metagenome / Metatranscriptome	197	Y
F032258	Metagenome / Metatranscriptome	180	Y
F036236	Metagenome / Metatranscriptome	170	N
F066605	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000040713	F001396	N/A	MEMVWVPIIVAIISGPLVVVLQKLRKENTNQHAEGQILLRMVGTKVDKIASKLDNHIGWHEGKKED*
Ga0070743_1000040714	F066605	N/A	MKEFRCLECLNVFMDSELPRRGSICFKCHIKSVRLGFTYGQEDFHGPTVKERADEQVRVAKEAGITAEPVGSRWV*
Ga0070743_1000040716	F036236	AGGAG	MNKAKDIAGRIVALFLTNALGVVTGAAIIAPDLEVWKSALIAGAVSIFKVAEQLAKASIDGVLTKDEIDAAFGASPKKIAAKKVAAKKA*
Ga0070743_1000040722	F026484	GAG	MATTNDAMFTALSGSYPSAGQTLGDLLYAFWSEKGLQYRGTLERDWYISEGAVGTTLGDLANDYFSNLYDVVIFNYSEPDEWLELQVFDRFDTVEQQVFFI*
Ga0070743_1000040723	F013753	N/A	MKHNEELTLTQQQQVYVEWLCTAPSERLPATKKAMALELGVDITTLRRWEKKEVFRNVWKDTVDEVQGSPERTQRLLDTLYSKALDGDTKSAQLYLQATNRMAPPTVTVQTNKKAAELSDAELDSLIAAVAEREKAQRTHLKAL*
Ga0070743_100004074	F004761	AGGA	MSISLNTLRSQVRTMADLDEVDLPNTIVDQFAREGFQRIYALERRWPYLQETYTFNTVVNQREYTISTIGDIREIISVLDTSSSGARLTLIPYDNAEEIWLGNTDVPSRPYFYSFWDKKLQLWAKPDAVYPMTVRAFRNPVYTWLSNPDETIDLDEWFHALLPYFVLGRVYQRQEDAQLSQMYLNSFEQGVGLARRDLMKASSAQPVVMSGGRQYPTMRRWLQTLGATIGQ*
Ga0070743_100004075	F032258	N/A	MKNAVPAHSYYGQPVFGIRLAPTAGAKIAAPSAPYVGRNRCIANEDSCEGPKARGTDYCIGHLRSQGRAK*