Scaffold Ga0070743_10000310

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000310
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19239
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (53.23%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F007919	Metagenome / Metatranscriptome	342	Y
F012341	Metagenome / Metatranscriptome	281	Y
F014004	Metagenome / Metatranscriptome	266	Y
F037722	Metagenome / Metatranscriptome	167	Y
F063622	Metagenome / Metatranscriptome	129	Y
F070113	Metagenome / Metatranscriptome	123	Y
F073557	Metagenome / Metatranscriptome	120	Y
F085383	Metagenome / Metatranscriptome	111	N
F086835	Metagenome / Metatranscriptome	110	Y
F093767	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100003101	F037722	N/A	VGLMGWALVSFFPLTWGQALIISWMYNKLTDVLE*
Ga0070743_1000031014	F063622	GAGG	MKLHERLTEWYYTHDAVQSGDVIANEIVDVVKDWLKTHHREETKYDADYNAGWMDCIETLEKDAR*
Ga0070743_1000031020	F073557	GGA	MTDAQICEMVNMHRYLMMCEIKHAFHKFCAENGNQDYSAANRSEAFNDTKWIEFAKWFKDIRDE*
Ga0070743_1000031028	F007265	N/A	MTFQPYNIVPGTQIVHNLTDVYELTDEAEEMVYRVELNADNGGIYIRSSEKGLEEGSKNITEDMSIGNKELSICVARRILELYSVN*
Ga0070743_1000031033	F012341	N/A	MNITMKQFFDMVAKTIAEPHTIITEHDKRRAIRVFLYLDEFMMENVPEYCGDTELGEIDFGSYAAGVLDEIEGK*
Ga0070743_1000031034	F085383	AGG	MTETEKLYKICILDLLIAIDDDVVDWRDYPKLWTAIQKADIALDIWAGMNLKQIKQELEGK*
Ga0070743_1000031044	F093767	N/A	MMLNPKDNIIQARLYSPHKCEYVCEREDGTHYVYRRLGKEEYYELHPNPTGETKWVWGCKIK*
Ga0070743_1000031059	F014004	N/A	MMATLTLQVTEVQFDFDDLDFTPEEQQAVLDDVLGNVFEVEVDDGYDDEVVADALVEEVTDYAGWCVCSLDFVHVLNTH*
Ga0070743_1000031062	F070113	N/A	MTLNKAQFAQFVENYVSDIVEGLDVDQLSTIAFDLLVREYETYTEEQIVNEIKEIYDDEYAQGLLESATAVPVA*
Ga0070743_100003107	F007919	GAGG	MTERLKFTQVSRVICPKTGIHYLDAIDEYGNHWTAQQETSVEKWITYKQLWTQDPQQPVKLCLKPTSQKFS*
Ga0070743_100003108	F086835	N/A	MPETDISKILIEGDTVTIMGVRYQRIIEPQSFYDKLYGLLDDNLIEWVDTDGITIRVLDLIRENIPEYKKGVGLPEYNAGWNDAIKTLKDKLR*