Scaffold Ga0070743_10000168

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000168
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24283
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (18.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007652	Metagenome / Metatranscriptome	347	Y
F011718	Metagenome	288	Y
F042288	Metagenome / Metatranscriptome	158	Y
F053639	Metagenome	141	N
F084120	Metagenome	112	Y
F088643	Metagenome	109	N
F088918	Metagenome / Metatranscriptome	109	N
F099146	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000016810	F084120	N/A	MIYETIENGRSFSGEVYNSEAPSAIVLEGLECEAISFSKVRKELNKEFKFCSHKVLVEYLSNLNNEY*
Ga0070743_1000016823	F042288	N/A	MKESIKLTVRVAAEHPDAETFKCLGNKIVLELNDYDYAYEFTMTMLNLRGDDRFEHGDLMFFNEGILIEIDR*
Ga0070743_1000016824	F088643	GAG	MKKEEKDAIIDILTKWRDMIGVNGRTVENLIDKVNQIYIPEPIDIQEVDVIKADIVNMCNQIKYDAKQNNVRGFDNTTKRMAIYKASEIKYGRTSSMERAAKDFFGKDRTTLLYWSRKSDDFIDVKDPMFVRYVNELL*
Ga0070743_1000016834	F088918	N/A	MAYKKKIKLTITDEVYERMQSRNQLWTREAFDQSEELAGQFKDNILYMCEKKGVKVTEMVRWLNEMGLKFVIRRLYKWGEVHAIYPTLVEITFFSKYFEIDPGIMVSKDLRAVDRLKGISKKNI*
Ga0070743_1000016835	F099146	N/A	MRASTFICTNIEEIEMAKEENEKLNLPSPPPLPKPNYEESVGWFHIEDVTRAYTRNINNKAVASLVFSDGSYMDVKMTSEMEDMLDILFRNTL*
Ga0070743_1000016836	F011718	N/A	MNWILNNNIVKHLLKTYLPYLIAFLMGVIVAWKGCGDTSGKPVTTIIEKPVPTIEYVDRWRTDTVRFVSKEFVTVMDTITSEIIVNRLDTLFLVDTVSIVEAWLTEIAKYDTTIDQKKASISLNWQNYQNRSENLKVTYTPKKTPLKWALGIHANAGLLSNFKNRYVPLMGVGLQGTVKNGYYGIDYGFNGDHYIGLRVGRNFISR*
Ga0070743_1000016839	F053639	AGGA	MSLLRDTNNNLSSKRVAGYAVLSVVLFAFVGDLFEKLVINESVANTLIMSAAALLGIGTFEKKH*
Ga0070743_1000016840	F007652	AGCAG	MNEIKYPEVRTYYICFDDERTEVKSYGWVEPNQVFTTIWIFDEFTDEAQWAAELLEWGIVPEIDEQGNLVL*