Scaffold Ga0070743_10000113

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10000113
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27479
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (83.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040079	Metagenome / Metatranscriptome	162	Y
F045675	Metagenome / Metatranscriptome	152	Y
F048913	Metagenome / Metatranscriptome	147	Y
F055647	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000011310	F045675	AGGA	MKKLLLALGFITACAPAHADMLQINVPCDPSPEVMRIMIQYKNSLLLSGTGTISAKNGKTFTSEAGIFLNQDTGTLAVVLSFPNGDKPPMSCLIIAGAEWEPYAGPQPWDKIKTKEDL*
Ga0070743_100001132	F048913	AGGAG	MCTPFVRKEANRLNWLVKGQLININESDATVEQLYDSYFKRLWNNTERSEYGSIGFETAYKQREVEVYNREITKVAVLGGHYD*
Ga0070743_1000011326	F040079	AGGAG	MFEVGMGIIRQYRDYTAKGEITSIHDDADGETLISVMYDDGAVKTYTENCVEQNLGRRMIVTEEVIW*
Ga0070743_1000011344	F055647	AGG	VHIVRKKDGEILAIASRLEDAMSIADGHRVDKEDYIVQESTDQQELTEIYRSYYRTRSS*