Scaffold Ga0073913_10002748

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10002748
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2343
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_100027482	F021759	AGAAGG	MDAGLAVVFAAVVAALGGIAVAIIQMRNLANENRTDHAIVQKRLDTVIDMVGKTSAKLTSHLDWHVNTSTKEPRKDLKVKQVATRKKK*
Ga0073913_100027483	F006986	N/A	VTAVLVIWHDAHSGSESWIPITSLDTEPAVVNTVGFLLSTTDGGKPEHVTVYQSRNEDAIDHVLHIPVKMVVSIKVLMDLEINTPDR*
Ga0073913_100027484	F005528	AGGA	MRILSAIMATLATLTMSLGIAHAAYAPDVTRSDFEALQPLWQPDRLDLPKPIRFRHGDVSWLPSLAKQAGWPDHAIPKLTELVLRESGACPNRRGGDIVDKDCNITGVSEWNHRSDTGLLQINGVNYDTKRNKWAAICRELNICTQAPLLDAYTNLQAGLVLYRISGFEPWNPCNWTVCKVSTTSMP*