Scaffold Ga0073913_10002743

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10002743
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_100027432	F071222	N/A	MDKEQIMTIILAEEVSLYDQAKESAEAFGRKDEATIRAYAQWYAIINLIDRINEETN*
Ga0073913_100027433	F015420	N/A	MKRLIKYFTPVGAEEKAFAIAMLIVTTVTLSILFLFTFLELIL*
Ga0073913_100027434	F004234	N/A	MNFIDLYKRNNTYFSNWTTDYDSTVYIAGTIEPFTYNATETDDGDMSLFILSDVNLNLLKSKL*
Ga0073913_100027435	F003327	N/A	MTEFTQLAIEVQNAIANGEYTHQKYLRFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNNDNEDI*
Ga0073913_100027436	F003299	N/A	MCQLKIMTMKTYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLIILIEEV*