Scaffold Ga0073913_10002117

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10002117
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2696
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004432	Metagenome / Metatranscriptome	438	Y
F025226	Metagenome	202	Y
F058793	Metagenome / Metatranscriptome	134	N
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_100021173	F058793	N/A	MNETEARLNSHEQVCTLRYEMLCARIKRLENVIMAASGVMLTGMGGIIFAMMK*
Ga0073913_100021174	F025226	N/A	VREFYGIAYTIHNPSERHQQMTMWLTNHQNLCKSTDFVVIWNNLSEWAGTADSALLRHKVIQGYKNALEREKK*
Ga0073913_100021175	F067527	GGA	MITLDKYYPIVQPRHDIESVAFDKAVEKVQEEYKQAAQANKIEKATIELELELYNKKARVNQLELAMFKTRRLDLYA*
Ga0073913_100021176	F004432	AGGA	MVTKKLPAKVAPVKRRSPKAEQTINVSVAAKSEPKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLSFAGYFAWDSRQVLLHAITTQDKMPQLAKQENLLAPARSLLKDVDGIVLLIHKANLATNSRTTVLALNIDGSREKSMEGTVTSLFNASADRNSAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDLGKFAGYVAIGFKEKPEDIVALKTRINLASTDMSEE*