Scaffold Ga0073913_10001988

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10001988
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2796
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001125	Metagenome / Metatranscriptome	769	Y
F053291	Metagenome / Metatranscriptome	141	N
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_100019881	F000311	N/A	MEMAYWDAQIMGLDPEAMSALTFNIGTGSIEKVSRIRDKYNLTESYISDYETTGY*
Ga0073913_100019884	F001125	AGGCGG	MGDRANFGFRDSKENVVFLYGHWAGHNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTQTTGWGIYINQLGDNEHKVPVIDWSNQTFTLYEEDLSTVVFTLSLAAFVDKYSRLVMV*
Ga0073913_100019886	F000868	AGGTGG	MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQMFADFRFAEMADNNYLKGRFNLFYDLNPGDQYYLECEEE*
Ga0073913_100019887	F053291	GAG	MITTQELIDYMYDDNLAHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0073913_100019889	F084239	AGAAGG	MTKSSYFLEYIKLHLISLEQDLEQIDYVNSHHLYRVKEAEIANTKHILSVATDIMNNNERV*