Basic Information | |
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Taxon OID | 3300005940 Open in IMG/M |
Scaffold ID | Ga0073913_10001472 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3344 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River, Washington | |||||||
Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F036694 | Metagenome | 169 | N |
F067741 | Metagenome | 125 | N |
F076085 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0073913_100014723 | F067741 | N/A | MKKFKIEFLDSDKCIAFTKFTKWETIEDCRLYAYVVMMNKVKTIQTFNITAI* |
Ga0073913_100014724 | F076085 | N/A | MKDLLSVSEFATLHSVSHQAIYYKIKTNQIKYIMIGKTKFIEKTSKYKRRAKNNCLIISKLHN* |
Ga0073913_100014725 | F036694 | N/A | LSIKTTIDKHFADYYSYYKRICKKYYNGRYLAEDMLHELYFKLLAEKPESIDKYNKDGKLYILGLYRLRDLFRNRTRTLQHIDGNTSSLHEMSNYEIRDFAEEPMELLPIDEINIERIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARVKLKNQLK* |
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