Scaffold Ga0073913_10000733

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10000733
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5072
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_100007331	F026867	GAG	MSSVRLNDTAMKLRKQDQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRLMQTGLNLPRPADRLRSAAGKAHALASRSDSRVSWRQIANTLKDEAWLHELREGNGSSDF*
Ga0073913_100007333	F048834	AGGAGG	MAIPGVDWAAALDAYVAGDREEVVPPGWFTKIDIAKLWGKTPVYTNKVLTRMMKSGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPSKSRKS*
Ga0073913_100007335	F009066	GGAG	VSPEHEKHLAGILSDLVKDVDAKYRKGQEQHGGALWRRPVWKDAWDECLDLCAYLHTLRMQLSVIADLALRGASDESVAASSSRESCRQILAVLEGFPSAVDKK*
Ga0073913_100007337	F031026	GAGG	MRGGLNALLLISALALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNSPCPQAYRDLFAESLKALSDSLAETERERARQ*