NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075123_10159215

Scaffold Ga0075123_10159215


Overview

Basic Information
Taxon OID3300005939 Open in IMG/M
Scaffold IDGa0075123_10159215 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034073Metagenome175Y
F047500Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0075123_101592151F034073GGAMEGGKISMAAIKQSYNKNVKNTKLGKALKETAGTALGQVYDTGTNMIGNTRYLGGVADALKKGKAKNVSKLTQLSGLGLKLQGGEMTDARYRRPITMGNGMHMGGGMCSMCGAGNDK
Ga0075123_101592152F047500N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVEMIIDPMTFHNMMKKLDKSKGVVIKMGSNEIEMNKMEGTGLFAGAGNKSGKISRVKKAGKWTGYVDDTARMGIDTGAYGYKKYQEAKNPIQSGVKKCSGSGIWIWRVVRYPWRLLNNPTIKM*
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