Basic Information | |
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Taxon OID | 3300005938 Open in IMG/M |
Scaffold ID | Ga0066795_10050447 Open in IMG/M |
Source Dataset Name | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1226 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom) |
Source Dataset Sampling Location | ||||||||
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Location Name | Alaska, USA | |||||||
Coordinates | Lat. (o) | 68.6137 | Long. (o) | -149.3144 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006757 | Metagenome / Metatranscriptome | 365 | Y |
F015375 | Metagenome / Metatranscriptome | 255 | Y |
F020884 | Metagenome | 221 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066795_100504472 | F020884 | AGGAG | MQIRNNRGEVIGEINSGFTDKGDRIITNTIYDRGNTVIQHISVRDNQGKVRTTNVIGGKILP* |
Ga0066795_100504473 | F006757 | AGG | MRDVAVLPPIKSEVRVALMNLTAFKEISTHNLIAMARSLPGGTKVHIPDRLTAIVLLLGTGPVDLA* |
Ga0066795_100504475 | F015375 | GGA | MQIGEPLRTIVVEPLEIPVNKPSAEPEPVVEQPEPVPEQVPVAQ* |
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