Scaffold Ga0081455_10048165

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10048165
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3685
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Asanoa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035933	Metagenome	171	Y
F049905	Metagenome	146	N
F051406	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_100481653	F049905	GGAG	MPTAHVRLKPIQWSQEIGHYPQQGGEGRYLRATCTYDDDSNVRLSTGARLSAFLVDLSILDEEPQNADGKPLKHGIGLLVFKHERPELAAYTNGWFPLRGKNYDAVWDQVHHGAYVGCDIDMWLSPLVSEPPNLVWDVDRPVFITAASVRFARTPPLQEPPTQPRHRGGLFSRR*
Ga0081455_100481654	F051406	AGGCGG	MLGGRPFSQIEWKRSASGWERMWQEGLKESEMRPPYQLSLAISAVTDEPISGKNATENVASAVALLTTAILKKTGSTIADNDDRFVAGIFVFAFSDYFTLVLPGNLEEASTLAMMKVLGIEEFRRGFDILWESYNELVRSRPKILEGLGKACAVWFKNPGGSEFEMLVELFKLARTHVVQK*
Ga0081455_100481656	F035933	N/A	MDEVPFKIVKMLGPRDEVIARVENFLICKAAFEKALFVYPDAHLEMRQGARIILKSKEETRP*