Scaffold Ga0081455_10030648

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10030648
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4882
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007479	Metagenome / Metatranscriptome	350	Y
F008716	Metagenome / Metatranscriptome	329	Y
F028225	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1003064811	F008716	GGA	MQQNEPDREARLRELASKLFFSMESEGGRFRLYRDADVSRPVRHEGLTLDEVEEILDTWKLRGFHGG*
Ga0081455_100306483	F007479	GGAGG	MTKTELFAASAAALILACVAGWAVLDTQARAAYPRTDQIDPLQIMTSTKQLPTEHFADYSFVF*
Ga0081455_100306489	F028225	AGGA	MPPLVLKRVPIGSNLEDYSVLEDGVVVGRIFLSPGAPQERPWMWASGHNGDIRRAAFGYEPTREAAMAAFAKSWRRE*