Scaffold Ga0081455_10026453

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10026453
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5335
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006769	Metagenome / Metatranscriptome	365	Y
F012601	Metagenome / Metatranscriptome	279	Y
F020051	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_100264532	F020051	GAGG	MGEADDRTEADGKSLFIIRNGRKVAKFEAGEWKPLLPGVIVRNTPHGIKIEWPH*
Ga0081455_100264533	F012601	N/A	MPHSKIKLVLVSARKSRGGDHWDKDDYDVRLGDKSGPVVGRIMRLPNSPKGRPWFLAITARGQPPSVYNRGYAESREQAMRYFKARYVGPPT*
Ga0081455_100264539	F006769	N/A	MKADELFRNVPANIHELRLVLVGLPQDMKVIAESETGLLENTVEELCARTTWPPDLVVTTPRRLRPKSVVKISKAT*