Scaffold Ga0081455_10024952

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10024952
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5525
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR39 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028769	Metagenome / Metatranscriptome	190	Y
F029281	Metagenome / Metatranscriptome	189	Y
F077476	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_100249522	F028769	AGGA	MRQSVLTIMAAGAVTAFAMVSFPAQAQYAHCLPVRGCVPTTQASYNACLTLARERGWRDSDNARRGGLNRGLDKFIYQCLQGRIPR*
Ga0081455_100249523	F028769	AGGAG	MRQSVLMIIAAGVVTAFAMASFPAQAQFAHCVAGRGCIPTTQASYNACLTLARQRGWTDSDNAPRGGIPRALDEFVYRCLQGRIPR*
Ga0081455_100249527	F029281	AGGAG	MKKLLTTVALAALVATPALAQTKDRAQQRVRAEAPQTHSTQAQQQRRSANPANDVYDVRGQYVGSDPDPTIRAQLANDPTQAAD*
Ga0081455_100249529	F077476	N/A	AISPVANAGQFYSYPQWEQLDETLRAVYIAGVFDSLLGIVRDRTDLPVTKHYDDCVTRANLSNGELADNVIAFVKARPNSQERSVSGALIKYLIAFCGAPPER*