Scaffold Ga0081455_10011239

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10011239
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9009
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003187	Metagenome / Metatranscriptome	502	Y
F054215	Metagenome / Metatranscriptome	140	Y
F061319	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1001123911	F061319	AGG	MTGSLDHFALIKASKSRGGVWSDDEYYVRAGHGKVVGRIMLRPRVLKDLSWFWTITAREIPPSVHNHGYSATREQAMADFRVRWAATIN*
Ga0081455_1001123915	F003187	AGGGGG	MKKFLVVICSVVLAFGLAGCVGKAPLGKGKAPVVQTRG*
Ga0081455_100112395	F054215	GAG	MFAHLLRTPDARYAIGAMVSWPVYGTLYITVLKIFDRHYSAAAGVSWILSYGVVYAFQKYGTFGAMGREAMLREIGRYAFAVVGLSAAVNLGLVTVLADFDPTLNKITAVAAAAVPAALVAWFVSTRVLRIGVPLRK*