Scaffold Ga0081455_10008950

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10008950
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10346
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003979	Metagenome / Metatranscriptome	459	Y
F009707	Metagenome / Metatranscriptome	314	Y
F032749	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1000895014	F003979	GGAG	MKKIALALALVLSGSGLVVGLSSTDANAGARKICKQGLKTHPMAGEHRDLMKQCKAVYKAHKGRARAT*
Ga0081455_1000895015	F009707	GGTGG	MTDQPDLNTGKEWSKNDLFSLRNRIEHGRTVSHVATFLRRTEAEVREKAAELGLKIPQAATE*
Ga0081455_1000895016	F032749	GAGG	MARWDFELDVDAEEIVVTLPFTHYTVTYYKPHNSPQLLARNFPSMDDSSAPMTQAEFLTQAWKLANEKARELGWVA*
Ga0081455_100089509	F003979	AGTAGG	MKKIALALALVLTSSGLVVGLASTDANAGARKICKQGLKTHPMAGEHRDLMKRCKAEYKAHKKAGRARAT*