NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081455_10002505

Scaffold Ga0081455_10002505


Overview

Basic Information
Taxon OID3300005937 Open in IMG/M
Scaffold IDGa0081455_10002505 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21798
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (70.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007007Metagenome / Metatranscriptome360Y
F007833Metagenome / Metatranscriptome344Y
F026381Metagenome / Metatranscriptome198Y
F029886Metagenome / Metatranscriptome187Y
F105109Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0081455_1000250511F007833GGAMPEWYFWVAQEWSVISAAPISFAIALVVVIIVVWAILHWFHRRILSSKDIQIEVLQSRLADYRNVLEGASPREAAYKITQLKGKLEAIKGAPRDENTIFQQGKRIGEVAGIRIDPPNNSVVFDRMTIAGHFDQASHVELKNLVLAFVGVDGFSQTRQGRTLVNAQFSVVGTAETKDLPSALA*
Ga0081455_1000250513F007007AGGAGGMAIHSKHLETLKAIITTALNIVTNRPLADLYVHKDYMGHFRIRVHLESGQRYVITIREE*
Ga0081455_100025052F026381GAGGMEGAKLLLAFLITLLIGQSISLSVGLLVERQVSPYTGLVTFIACYFAMFWVAWRVAVRITEPRSRRAADLKPMEDAG*
Ga0081455_1000250531F105109GAGMTSAPRALRNRAGRFIARVDAHLPTLCDDATRRAFLDRQLEGWEHRYARFLATEGASEPAADPADPPQAADYLLAITALAARRGALGGS*
Ga0081455_1000250533F029886AGGAMDDDRPHLEKKMGHKPYGHVPRFGKIAIWLVLIAIACGLILYLAVSTNLIR*
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