Scaffold Ga0081455_10001005

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10001005
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35749
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009013	Metagenome / Metatranscriptome	324	Y
F015357	Metagenome / Metatranscriptome	255	Y
F021978	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1000100516	F009013	N/A	VLGEVEAVVLEVKPWDVHGVGYVDVTVAYRDRSTEVARLGPESVPQDLRAGEPVVVSKAVNMIVAIRRA*
Ga0081455_1000100525	F021978	AGGAGG	MFSGEMARYQIADRHREAEADRLARSTRRSKALDRRSFTRRIGRAALAAATWPVKH*
Ga0081455_1000100531	F015357	GGCGG	MTYRTFRRRLSEATAAHDWLEGISFVIGVAFLALAAVCVWGIVTAVANIGDTASLPGTYAVGGFLEMTRGLAIVLFSVFALVAVAVGWFFAGDTFRRWFGRLRRRG*