Basic Information | |
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Taxon OID | 3300005937 Open in IMG/M |
Scaffold ID | Ga0081455_10000226 Open in IMG/M |
Source Dataset Name | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 72690 |
Total Scaffold Genes | 79 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (78.48%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | University of Puerto Rico, San Juan, Puerto Rico | |||||||
Coordinates | Lat. (o) | 18.402889 | Long. (o) | -66.050054 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007388 | Metagenome / Metatranscriptome | 352 | Y |
F007479 | Metagenome / Metatranscriptome | 350 | Y |
F015071 | Metagenome / Metatranscriptome | 257 | Y |
F049909 | Metagenome / Metatranscriptome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0081455_1000022627 | F015071 | GGA | MPIAQFLEGSEFDPETKRVIRVAFEMTRIALRYGNQGDLSEILGKTVATRLIELARSSELNPDHLCESVLSEFRQHF* |
Ga0081455_1000022628 | F049909 | GGAGG | MRNLVGAPSLIAALLLAAPQAVLAQSAPFCLKSALGAVSCTYHTMILCEQAKQPHSRDQCIPRFQADETTGRSTAPLGGPRQPGIAPAIDAIPAR* |
Ga0081455_100002266 | F007479 | AGGAG | MRQTNLFAAAAAASLILACVAGWVTSDTQARVATPSTVQIDPFQVMVSAKKLPTEHLADYSFVFAD* |
Ga0081455_1000022677 | F007388 | GGAGG | MISPTEYRAMAAEHHRLAGMCRSPDSREQHLRLEEEFRALAEREEHLHPPHVSTQASDPPVVENCGT* |
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