Scaffold Ga0075124_10064551

Overview

Basic Information

• Taxon OID: 3300005936
• Scaffold ID: Ga0075124_10064551
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018128	Metagenome	236	Y
F041484	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075124_100645511	F041484	N/A	TSYHRERWPTLAWVWDELDDLRENEAEAIDPDDYAALEEDLGNLQAVAEQRDALSQAVRILLEPEPDMDRVQAILAGEWS*
Ga0075124_100645512	F018128	GGCGG	MTDNAEQSARMRAMWSAVALTTIDDAIRHTARESKKHKGRALKTLELWANSRNGREVLSLAGIAPDKRVTDSMVAFAAKGVLTTTPRKKGAIK*