Scaffold Ga0075125_10022262

Overview

Basic Information

• Taxon OID: 3300005935
• Scaffold ID: Ga0075125_10022262
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2963
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075125_100222623	F007072	GGAGG	MELSKLGKKAQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNSIADAQDLTATCNHSGNGGTGSVYTGCGTAYNVSADLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTSRV*
Ga0075125_100222624	F007072	GGAGG	MELSKLGKKAQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTADSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV*
Ga0075125_100222626	F077915	AGGAG	MAITDYYVAPTGNETSGLFELSKYVGISATGGLFWPIMLLVIWIVSFLGFKQYSTSRAWTFASFFCSILGIFLAVLNLMNPRWMYLSVFMTLIGLVWLKLEAE*
Ga0075125_100222627	F075727	N/A	MEKMNKKGWVARDFIIAMLVFSGVLALFVVMIGSLANDYGNTEVISPEFSQKFDKFSENVDSGGEMWAASSGEGGLSLVGTADLLFFSTFKVISLVFDSVGLAWTQMAEFGEFFGIPSVISNIFVGLIFSILTVMIVFIIISSIRSGKEL*