Basic Information | |
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Taxon OID | 3300005935 Open in IMG/M |
Scaffold ID | Ga0075125_10021985 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2983 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Ace Lake, Antarctica | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F066431 | Metagenome | 126 | Y |
F079580 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075125_100219856 | F079580 | GGAG | MENEEQPYNEVADQVGVHNALQQGTNIATQNRQMQYQMEDAEQNLAEAQLDVTETLLSIRHLLQQDVYKPNLKNNNILEWIPIEDNKKRVLTEEGVDKIMQVMQSYINKETLLSNFDEKMIMRRMLDFSLAFSGLIFMKYEVYFRTPTLNECKEILQNRINEKISKRRIATELQGLGFDEKATKKIIIDELMERFEYELNKIKEEKTKLNLREFEMIFTQLKALVESIHNRAWKGEERGSLRRHFNISEVIGGKPQATPKKSGWFGMGG* |
Ga0075125_100219858 | F066431 | GGAG | MSNVYKKRTVTCRVDPEFKKFIDDLSRFKANQEKEEIKPSRITQAIFNQYKKYPNLLEEMKISKLGKW |
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