Scaffold Ga0066377_10035596

Overview

Basic Information

• Taxon OID: 3300005934
• Scaffold ID: Ga0066377_10035596
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1391
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002490	Metagenome / Metatranscriptome	554	Y
F017493	Metagenome / Metatranscriptome	240	Y
F034213	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066377_100355962	F002490	GGAGG	MELKEVKKEIKDYVRDHYKYYGFYPYDVEVGDTLYSYEQYMDILSMTL*
Ga0066377_100355963	F017493	AGGAGG	MALCDECSCYDDNWVDGEDITDEELENDPLYEPHRYYYWHGDIQEDYQMPAGYDCLCERCFGDFLNLGKIITTDDAAWNPDEMGWFIPYVEETHGT*
Ga0066377_100355964	F034213	GAGG	MGAKQKIQNLKNFATLDKPFKEWLTTCPREYIWQIDEVTKNHEGTFTFRRTNGIMR*
Ga0066377_100355965	F001419	N/A	SMNYEEILKCYEGETDIHASTSFEFGLMNDLYYQLFYSYPEVD*