NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066377_10000046

Scaffold Ga0066377_10000046


Overview

Basic Information
Taxon OID3300005934 Open in IMG/M
Scaffold IDGa0066377_10000046 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28320
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (79.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012180Metagenome / Metatranscriptome283Y
F046081Metagenome / Metatranscriptome152Y
F057761Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0066377_1000004610F012180AGGAMKINHTKTAIGGLFIVIIAFAFLILTTKANAEELTLEQRVSKLENKTSSYDIPEGFFINGEVEAYYDDKTYDSGWDSRGYLQLGISTEVPKNNLSIDWVGGTTKIDSHYSLDRTQDNKLVEKQLGFGNDFARWYIGETDAQRMGFAKTPKISAPLIYTETNYRIDHREKTVLTFGGWQYDNEFDFDSYRLKRETPWGVALGYDNDNNVAYATGTVSLMGYADVSYMRITGPEETTKGDQEGYAIGGSLHRFGVPMLWGVEIWDDKNTGLASDDRMDYGVMYNINKQTYVTAHRTENDDLGYDGNYYGIVHNIYNNYDPSKRPDKQDGLELGLYLHDKEQTSVYTGAHTDYGQQIIGSIRYKF*
Ga0066377_1000004615F046081AGGTGGMFWRKGSYEFIQDSEVELESKLSFVDVKDLSEGSCAFIENITDERVIVHWFDKTDPTKLVNTQELNQPMFINTAHPVTLKNLGDKSAVVRYVDLNTVIENYTGI*
Ga0066377_1000004617F057761GAGGMLEKKFNLKQYNGPPYSYSVKVNGKLKRMSGFDEEHIKIQLYPRKATMIRKVKDEI*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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