NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066377_10000027

Scaffold Ga0066377_10000027


Overview

Basic Information
Taxon OID3300005934 Open in IMG/M
Scaffold IDGa0066377_10000027 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35834
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020012Metagenome / Metatranscriptome226Y
F043962Metagenome / Metatranscriptome155Y
F076118Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0066377_1000002711F020012N/AMAEELIPLNAFKSVLTTLTGDDDVVYSAPKGVSTILLSAQITNTGTVNQPVTISITSNRDLPVPQVDSINNSGSFLSASALIAKNQIFIEKESAAYTNFQNNLQPIPFSFTSSFFEEYVRTAIDGVEADLIAAEGGTLQSKKAALSYYNKNGEILIPNNYFTASYQAIDYANLLVQQILINESVTGSSDVTRLYQESVTQSIDNSLIAESGSISASVDLLNAISNTISNPTRVEQAPVDLITNVEIPAGDSLSPIVAGKLVLEQQFSLIVSGSTDLTVILSILESANE*
Ga0066377_100000273F043962N/AMAVTYSWGVTQMTKKTVGDYENVILHVRWTCTGTESTTGTEGRFVGATPIDFDSGSADEFVAFGDLTEELVCGWVSASVTSPATGYWDHISEQIQKKIDEVDDASEEIGEGDLPWSTGSVTPTPVSGSE*
Ga0066377_100000277F076118N/AMRIDQPSFSGSITQAPSAYAELSGSFTGSFSGSVTGSFTGDITVEQAEFTDLIVRQTLNVGTTNTGSITNIINSGSVEVSGSINVTQGNSFTVEGVDVLDSALAFSIALG*
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